- Home
- Bioconductor 3.4
- Software Packages
- epivizrStandalone
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epivizrStandalone")
In most cases, you don't need to download the package archive at all.
epivizrStandalone
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see epivizrStandalone.
Run Epiviz Interactive Genomic Data Visualization App within R
Bioconductor version: 3.4
This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.
Author: Hector Corrada Bravo, Jayaram Kancherla
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
Citation (from within R,
enter citation("epivizrStandalone")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("epivizrStandalone")
Documentation
| HTML | Introduction to epivizrStandalone | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GUI, Infrastructure, Software, Visualization |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.2.3), epivizr(>= 2.3.6), methods |
| Imports | git2r, epivizrServer, GenomeInfoDb, BiocGenerics, GenomicFeatures, S4Vectors |
| LinkingTo | |
| Suggests | testthat, knitr, rmarkdown, OrganismDbi(>= 1.13.9), Mus.musculus, Biobase, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | epivizrStandalone_1.2.0.tar.gz |
| Windows Binary | epivizrStandalone_1.2.0.zip |
| Mac OS X 10.9 (Mavericks) | epivizrStandalone_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/epivizrStandalone/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/epivizrStandalone/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
