To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("canceR")
In most cases, you don't need to download the package archive at all.
canceR
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see canceR.
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.
Bioconductor version: 3.4
The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.
Maintainer: Karim Mezhoud <kmezhoud at gmail.com>
Citation (from within R,
enter citation("canceR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("canceR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("canceR")
| canceR Vignette | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GUI, GeneExpression, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
| License | GPL-2 |
| Depends | R (>= 3.3), tcltk, tcltk2, cgdsr |
| Imports | GSEABase, GSEAlm, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils |
| LinkingTo | |
| Suggests | testthat (>= 0.10.0), R.rsp |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | canceR_1.6.0.tar.gz |
| Windows Binary | canceR_1.6.0.zip |
| Mac OS X 10.9 (Mavericks) | canceR_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/canceR/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/canceR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
