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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HelloRanges")
In most cases, you don't need to download the package archive at all.
HelloRanges
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see HelloRanges.
Introduce *Ranges to bedtools users
Bioconductor version: 3.4
Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.
Author: Michael Lawrence
Maintainer: Michael Lawrence <michafla at gene.com>
Citation (from within R,
enter citation("HelloRanges")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HelloRanges")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HelloRanges")
| R Script | HelloRanges Tutorial | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Coverage, DataImport, GenomeAnnotation, SequenceMatching, Sequencing, Software, VariantAnnotation |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | methods, BiocGenerics, S4Vectors(>= 0.11.6), IRanges(>= 2.7.11), GenomicRanges(>= 1.25.5), Biostrings(>= 2.41.3), BSgenome, GenomicFeatures, VariantAnnotation(>= 1.19.3), Rsamtools, GenomicAlignments, rtracklayer(>= 1.33.8), GenomeInfoDb, SummarizedExperiment |
| Imports | docopt, stats, tools, utils |
| LinkingTo | |
| Suggests | HelloRangesData, BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HelloRanges_1.0.1.tar.gz |
| Windows Binary | HelloRanges_1.0.1.zip |
| Mac OS X 10.9 (Mavericks) | HelloRanges_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/HelloRanges/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/HelloRanges/ |
| Package Downloads Report | Download Stats |
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