- Home
- Bioconductor 3.4
- Software Packages
- Heatplus
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Heatplus")
In most cases, you don't need to download the package archive at all.
Heatplus
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see Heatplus.
Heatmaps with row and/or column covariates and colored clusters
Bioconductor version: 3.4
Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.
Author: Alexander Ploner <Alexander.Ploner at ki.se>
Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>
Citation (from within R,
enter citation("Heatplus")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Heatplus")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Heatplus")
| R Script | Annotated and regular heatmaps | |
| R Script | Commented package source | |
| R Script | Old functions (deprecated) | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Microarray, Software, Visualization |
| Version | 2.20.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (11 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | graphics, grDevices, stats, RColorBrewer |
| LinkingTo | |
| Suggests | Biobase, hgu95av2.db, limma |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/alexploner/Heatplus |
| BugReports | https://github.com/alexploner/Heatplus/issues |
| Depends On Me | GeneAnswers, phenoTest, tRanslatome |
| Imports Me | |
| Suggests Me | mtbls2, RforProteomics |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Heatplus_2.20.0.tar.gz |
| Windows Binary | Heatplus_2.20.0.zip |
| Mac OS X 10.9 (Mavericks) | Heatplus_2.20.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Heatplus/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/Heatplus/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
