To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

In most cases, you don't need to download the package archive at all.

DNAcopy

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see DNAcopy.

DNA copy number data analysis

Bioconductor version: 3.4

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Citation (from within R, enter citation("DNAcopy")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAcopy")

PDF	R Script	DNAcopy
PDF		Reference Manual

biocViews	CopyNumberVariation, Microarray, Software
Version	1.48.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 12 years)
License	GPL (>= 2)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	CGHcall, cghMCR, Clonality, CRImage, PureCN, snapCGH
Imports Me	ADaCGH2, AneuFinder, ArrayTV, ChAMP, Clonality, cn.farms, CNAnorm, CNVrd2, contiBAIT, conumee, CopywriteR, GWASTools, MEDIPS, MinimumDistance, QDNAseq, rCGH, Repitools, snapCGH
Suggests Me	beadarraySNP, Clonality, cn.mops, fastseg, genoset
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	DNAcopy_1.48.0.tar.gz
Windows Binary	DNAcopy_1.48.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)	DNAcopy_1.48.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/DNAcopy/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/DNAcopy/
Package Downloads Report	Download Stats

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