## ----style, echo = FALSE, results = 'asis'------------------------------- BiocStyle::markdown() ## ---- makeAnnotationHubResource, eval=FALSE------------------------------ ## require(AnnotationHubData) ## makeAnnotationHubResource("Inparanoid8ImportPreparer", ## makeinparanoid8ToAHMs) ## ---- updateResources, eval=FALSE---------------------------------------- ## library(AnnotationHubData) ## ## mdinp = updateResources(ahroot=getwd(), ## BiocVersion=biocVersion(), ## preparerClasses = "Inparanoid8ImportPreparer", ## insert = FALSE, ## metadataOnly=TRUE) ## ------------------------------------------------------------------------ options("AH_SERVER_POST_URL"="http://:9393/resource") ## ---- eval=FALSE--------------------------------------------------------- ## mdinp = updateResources(ahroot, ## BiocVersion, ## preparerClasses = "Inparanoid8ImportPreparer", ## insert = TRUE, ## metadataOnly=FALSE) ## ---- eval=FALSE--------------------------------------------------------- ## mdinp = updateResources(ahroot, ## BiocVersion, ## preparerClasses = "Inparanoid8ImportPreparer", ## insert = TRUE, ## metadataOnly=FALSE) ## ---- test_client, eval=FALSE-------------------------------------------- ## options(ANNOTATION_HUB_URL="http://gamay:9393") ## library(AnnotationHub) ## ah = AnnotationHub() ## length(ah) ## should be larger than you started with ## tail(ah) ## should have some new records ## ---- test_client2, eval=FALSE------------------------------------------- ## foo = mcols(ah)