FAMEoutliers            FAME outlier detection
FindAllPeaks            Extract peaks from chromatogram files - low
                        level function
FindPeaks               Extract peaks from chromatogram files
ImportFameSettings      Retention time markers settings
ImportLibrary           Library import
ImportSamples           Sample definitions
NetCDFPeakFinding       Peak picking algorithm from CDF files
Profile                 Average the correlating masses for each
                        metabolite
ProfileCleanUp          Reduce redundancy of the profile
RIcorrect               Peak picking from CDF files and RI correction
TSExample               Example GC-MS data for TargetSearch Package
TargetSearch-defunct    Defunct functions in package 'TargetSearch'
TargetSearch-deprecated
                        Deprecated functions in package 'TargetSearch'
TargetSearch-package    A targeted approach for GC-MS data.
Write.Results           Save TargetSearch result objects into files
baseline                Baseline correction - wrapper function
baselineCorrection      Baseline correction - Chang's method
baselineCorrectionQuant
                        Baseline correction - quantiles method
checkRimLim             Visually check retention index marker limits
fixRI                   Fixing Retention Time Index Correction
makeIndex               Make an index vector out of selective/top
                        masses
medianRILib             Median RI library correction
ncdf4Convert,tsSample-method
                        Method for converting CDF-3 files to CDF-4
ncdf4_convert           Convert from a NetCDF file format 3 to format 4
ncdf4_convert_from_path
                        Convert CDF files to CDF4 from a path
                        automatically
ncdf4_data_extract      Extract data ranges from a NetCDF file format 4
ncdf4_plot_peak         Plot peaks from ncdf4 files
ncdf4_update_ri         Update retention time index on a NCDF4 file
peakCDFextraction       NetCDF to R
peakFind                Intensities and RI matrices
plotFAME                Plot a standard marker
plotPeak                Plot peaks
plotPeakRI              Plot peak RI across samples
plotPeakSimple          Plot peaks - simple (old) interface
plotRIdev               Plot Retention Time Index Deviation
plotRefSpectra          Plot reference spectrum of a compound
plotSpectra             Plot a Spectra Comparison
quantMatrix             Create an intensity matrix using quantification
                        masses
ri2rt                   Retention Time Index to Retention Time
                        conversion
riMatrix                Retention Time Index Matrix
ri_data_extract         Extract peak data from a RI file
ri_plot_peak            Plot peak RI across samples - low level
                        interface
rt2ri                   Retention Time to Retention Time Index
                        conversion
sampleRI                Sample specific RI detection
text2bin                Convert RI files from text to binary format and
                        vice versa
tsLib-class             Class for representing a reference library
tsMSdata-class          Class for representing MS data
tsProfile-class         Class for representing a MS profile
tsRim-class             Class for representing retention index markers
tsSample-class          Class for representing samples
tsUpdate,tsSample-method
                        Methods for Updating TargetSearch objects
                        'tsUpdate'
updateRI                Updating Time Index correction
writeLibText            Save a library object in text format
writeMSP                Save spectra in MSP format to be visualized in
                        NIST
