## ----echo = FALSE-------------------------------------------------------------
knitr::opts_chunk$set(
  eval=FALSE
)

## -----------------------------------------------------------------------------
# if(!"RCy3" %in% installed.packages()){
#     install.packages("BiocManager")
#     BiocManager::install("RCy3")
# }
# library(RCy3)

## -----------------------------------------------------------------------------
# openSession()

## -----------------------------------------------------------------------------
# setVisualStyle('default')
# setNodeColorDefault('#D8D8D8')

## -----------------------------------------------------------------------------
# setNodeCustomBarChart(c("gal1RGexp","gal4RGexp","gal80Rexp"))

## -----------------------------------------------------------------------------
# setNodeCustomPosition(nodeAnchor = "S", graphicAnchor = "N")

## -----------------------------------------------------------------------------
# setNodeCustomHeatMapChart(c("gal1RGexp","gal4RGexp","gal80Rexp"), slot = 2)
# setNodeCustomPosition(nodeAnchor = "N", graphicAnchor = "S", slot = 2)

## -----------------------------------------------------------------------------
# setNodeCustomPieChart(c("Radiality", "Degree"), slot = 3)
# setNodeCustomPosition(nodeAnchor = "W", xOffset = -20, slot = 3)

## -----------------------------------------------------------------------------
# installApp("enhancedGraphics")

## -----------------------------------------------------------------------------
# all.nodes<-getAllNodes()
# label.df<-data.frame(all.nodes, "label: attribute=COMMON labelsize=10 color=red outline=false background=false")
# colnames(label.df)<-c("name","my second label")

## -----------------------------------------------------------------------------
# loadTableData(label.df, data.key.column = "name", table.key.column = "name")

## -----------------------------------------------------------------------------
# label.map<-mapVisualProperty('node customgraphics 4','my second label','p')
# updateStyleMapping('default', label.map)

## -----------------------------------------------------------------------------
# setNodeCustomPosition(nodeAnchor = "E", graphicAnchor = "C", xOffset = 10, slot = 4)