ToxicoGx
This is the development version of ToxicoGx; for the stable release version, see ToxicoGx.
Analysis of Large-Scale Toxico-Genomic Data
Bioconductor version: Development (3.21)
Contains a set of functions to perform large-scale analysis of toxicogenomic data, providing a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxicogenomic data.
Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Jermiah Joseph [aut], Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>
citation("ToxicoGx")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ToxicoGx")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ToxicoGx")| ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, Pharmacogenetics, Pharmacogenomics, Software |
| Version | 2.11.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (4 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.1), CoreGx |
| Imports | SummarizedExperiment, BiocGenerics, S4Vectors, Biobase, BiocParallel, ggplot2, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, data.table, assertthat, scales, graphics, grDevices, parallel, stats, utils, limma, jsonlite |
| System Requirements | |
| URL |
See More
| Suggests | rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools, PharmacoGx, xtable, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ToxicoGx_2.11.0.tar.gz |
| Windows Binary (x86_64) | ToxicoGx_2.11.0.zip |
| macOS Binary (x86_64) | ToxicoGx_2.11.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ToxicoGx |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ToxicoGx |
| Bioc Package Browser | https://code.bioconductor.org/browse/ToxicoGx/ |
| Package Short Url | https://bioconductor.org/packages/ToxicoGx/ |
| Package Downloads Report | Download Stats |