OncoScore
This is the development version of OncoScore; for the stable release version, see OncoScore.
A tool to identify potentially oncogenic genes
Bioconductor version: Development (3.21)
OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.
Author: Luca De Sano [cre, aut] (ORCID:
Maintainer: Luca De Sano <luca.desano at gmail.com>
citation("OncoScore")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("OncoScore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OncoScore")| Introduction | HTML | R Script |
| Running OncoScore | HTML | R Script |
| Reference Manual |
Details
| biocViews | BiomedicalInformatics, Software |
| Version | 1.35.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
| License | file LICENSE |
| Depends | R (>= 4.1.0) |
| Imports | biomaRt, grDevices, graphics, utils, methods |
| System Requirements | |
| URL | https://github.com/danro9685/OncoScore |
| Bug Reports | https://github.com/danro9685/OncoScore |
See More
| Suggests | BiocGenerics, BiocStyle, knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OncoScore_1.35.0.tar.gz |
| Windows Binary (x86_64) | OncoScore_1.35.0.zip |
| macOS Binary (x86_64) | OncoScore_1.35.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/OncoScore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OncoScore |
| Bioc Package Browser | https://code.bioconductor.org/browse/OncoScore/ |
| Package Short Url | https://bioconductor.org/packages/OncoScore/ |
| Package Downloads Report | Download Stats |