ClustAll
This is the development version of ClustAll; for the stable release version, see ClustAll.
ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases
Bioconductor version: Development (3.21)
Data driven strategy to find hidden groups of patients with complex diseases using clinical data. ClustAll facilitates the unsupervised identification of multiple robust stratifications. ClustAll, is able to overcome the most common limitations found when dealing with clinical data (missing values, correlated data, mixed data types).
Author: Asier Ortega-Legarreta [aut, cre] (ORCID:
Maintainer: Asier Ortega-Legarreta <aortegal at navarra.es>
citation("ClustAll")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ClustAll")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ClustAll")| ClustALL User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, DimensionReduction, PrincipalComponent, Software, StatisticalMethod |
| Version | 1.3.0 |
| In Bioconductor since | BioC 3.19 (R-4.4) (0.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.2.0) |
| Imports | FactoMineR, bigstatsr, clValid, doSNOW, parallel, foreach, dplyr, fpc, mice, modeest, flock, networkD3, methods, ComplexHeatmap, cluster, RColorBrewer, circlize, grDevices, ggplot2, grid, stats, utils, pbapply |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, knitr, BiocGenerics, rmarkdown, BiocStyle, roxygen2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ClustAll_1.3.0.tar.gz |
| Windows Binary (x86_64) | ClustAll_1.3.0.zip |
| macOS Binary (x86_64) | ClustAll_1.3.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ClustAll |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ClustAll |
| Bioc Package Browser | https://code.bioconductor.org/browse/ClustAll/ |
| Package Short Url | https://bioconductor.org/packages/ClustAll/ |
| Package Downloads Report | Download Stats |