CHANGES IN VERSION 1.25.3 ------------------------- BUG FIXES o Fix parallel processing with SNOW CHANGES IN VERSION 1.25.2 ------------------------- USER VISIBLE CHANGES: + Disabled Rmpi support and usage on Windows CHANGES IN VERSION 1.25.1 ------------------------- BUG FIXES o Fix the import of the igraph methods, because it also exported a groups function. Solves the error "Error in x$membership : $ operator not defined for this S4 class" CHANGES IN VERSION 1.23.2 ------------------------- BUG FIXES o Fix bug in generateRules() if no ions matching the polarity are provided explicitly CHANGES IN VERSION 1.23.1 ------------------------- BUG FIXES o Fix bug in generateRules() with empty neutraladditions CHANGES IN VERSION 1.20.1 ------------------------- NEW FEATURES o Added possibility to pass cor_exp_th from annotateDiffreport to groupCorr() CHANGES IN VERSION 1.20.0 ------------------------- SIGNIFICANT USER-VISIBLE CHANGES o Version bump for BioC release CHANGES IN VERSION 1.19.1 ------------------------- BUG FIXES o Fixed bug in the generateRules function, where in the negative mode rules with polycharged positve ions are not created CHANGES IN VERSION 1.15.5 ------------------------- SIGNIFICANT USER-VISIBLE CHANGES o MPI Version of findAdducts() should now consume a lot less memory then before CHANGES IN VERSION 1.15.4 ------------------------- NEW FEATURES o findKendrickMass() now allows negative retention time windows, essentially allowing homologous series of losses CHANGES IN VERSION 1.15.1 -------------------------- BUG FIXES o Fix in findIsotopes, where sometime peak with huge m/z differences where annotated as isotopes CHANGES IN VERSION 1.13.9 ------------------------- SIGNIFICANT USER-VISIBLE CHANGES o findNeutralLossSpecs and findNeutral now accepts multiple masses and use correctly the ppm error BUG FIXES o Memory fix in groupCorr if all peaks are contained in one group. CHANGES IN VERSION 1.13.8 ------------------------- SIGNIFICANT USER-VISIBLE CHANGES o Add igraph package to the dependencies BUG FIXES o Fix for groupCorr with graphMethod="lpc", with a igraph library > 0.6 CHANGES IN VERSION 1.13.7 ------------------------- BUG FIXES o Fixed problem in findIsotopes with a previous grouped single sample xcmsSet CHANGES IN VERSION 1.13.6 ------------------------- BUG FIXES o Fixed problem in findAdducts where higher nM+x annotations were erroneous deleted o Fixed problem in combinexsAnnos, which produces a "subscript out of bounds " error CHANGES IN VERSION 1.13.5 ------------------------- BUG FIXES o Fixed problem "Error in data.frame(...)" in findAdducts when using polarity = negative