Changes in version 1.0.2                        

  - storage of phenoData into cache upon execution of CytoPipeline
    object (and back into CytoPipeline object when re-built from cache)
  - changed the default behaviour of estimateScaleTransforms() so that
    the default method for scatter channels is now "none" instead of
    "linearQuantile"
  - changed default behaviour of ggplotEvents() and
    ggplotFilterEvents(), when logicle scale is used but no logicle
    parameters provided, these are now estimated using
    flowCore::estimatLogicle(), instead of explicit default values

                        Changes in version 1.0.1                        

  - tiny modifications to support upgrade to Bioc 3.18

                         Changes in version 1.0                         

                        Changes in version 0.99                         

CytoPipeline 0.99.6

  - corrected the OMIP021Samples fcs data in order to keep the original
    file name
  - bug correction: error message on execution with no sample file
  - added phenoData slot in CytoPipeline object
  - updated readSamples() to allow passing a pData parameters
  - updated compensateFromMatrix() to allow passing a mapping based on a
    pData variable
  - updated readSamples() to allow selecting a random number of samples
    and removed selectSamples()
  - vignette with demo and links to videos

CytoPipeline 0.99.5

  - reactivated unit tests for ggplot2 objects
  - added man page for CytoPipeline package
  - a few modifs in the vignette related to Bioc review process
  - replaced withr::local_tempdir() by base::tempdir()
  - removed extraneous whitespaces in CytoPipeline show() method
  - removed LazyData: true in DESCRIPTION file
  - replaced paste0(path, "/", filename) by file.path(path, filename)
  - updated License field in DESCRIPTION file

CytoPipeline 0.99.4

  - improved CytoPipeline constructors (experimentName and sampleFiles
    are now parameters of all constructor version)
  - centralized the production of standard outputs during pipeline
    execution, set all tuning parameters in execute() instead of slots
    in CytoPipeline object.

CytoPipeline 0.99.3

  - some minor changes for BiocCheck()

CytoPipeline 0.99.2

  - removed dependencies to a number of packages, moved corresponding
    implementations of CytoProcessingSteps (wrappers) into
    CytoPipelineUtils package

CytoPipeline 0.99.1

  - Maintenance due to Bioc version change (3.17)
  - removed use of openCyto::gate_tail() (disappeared w/o deprecation),
    replaced by flowDensity::deGate()
  - implemented export of pre-processed file (writeFlowFrame as a
    CytoProcessingStep implementation)
  - extended readSampleFiles : mapping between channels and markers
  - selectRandomSamples (new CytoProcessing step implementation)

CytoPipeline 0.99.0

  - Prior to Bioconductor submission