PrecisionTrialDrawer

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PrecisionTrialDrawer.

A Tool to Analyze and Design NGS Based Custom Gene Panels


Bioconductor version: 3.17

A suite of methods to design umbrella and basket trials for precision oncology.

Author: Giorgio Melloni, Alessandro Guida, Luca Mazzarella

Maintainer: Giorgio Melloni <melloni.giorgio at gmail.com>

Citation (from within R, enter citation("PrecisionTrialDrawer")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PrecisionTrialDrawer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, GeneExpression, Sequencing, Software, SomaticMutation, WholeGenome
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6)
Imports graphics, grDevices, stats, utils, methods, cBioPortalData, parallel, stringr, reshape2, data.table, RColorBrewer, BiocParallel, magrittr, biomaRt, XML, httr, jsonlite, ggplot2, ggrepel, grid, S4Vectors, IRanges, GenomicRanges, LowMACAAnnotation, googleVis, shiny, shinyBS, DT, brglm, matrixStats
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, dplyr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/PrecisionTrialDrawer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PrecisionTrialDrawer
Package Short Url https://bioconductor.org/packages/PrecisionTrialDrawer/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.17 Source Archive