JASPAR2022
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see JASPAR2022.
Data package for JASPAR database (version 2022)
Bioconductor version: 3.16
JASPAR is an open-access database containing manually curated, non-redundant transcription factor (TF) binding profiles for TFs across six taxonomic groups. In this 9th release, we expanded the CORE collection with 341 new profiles (148 for plants, 101 for vertebrates, 85 for urochordates, and 7 for insects), which corresponds to a 19% expansion over the previous release. To search thisdatabases, please use the package TFBSTools (>= 1.31.2).
Author: Damir Baranasic [aut, cre] 
Maintainer: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk>
citation("JASPAR2022")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("JASPAR2022")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("JASPAR2022")| JASPAR2022 | HTML | R Script |
| Reference Manual |
Details
| biocViews | AnnotationData, AnnotationHub, FunctionalAnnotation |
| Version | 0.99.7 |
| License | GPL-2 |
| Depends | R (>= 4.1.0), methods, BiocFileCache, utils |
| Imports | |
| System Requirements | |
| URL | http://jaspar.genereg.net/ |
See More
| Suggests | knitr, rmarkdown, BiocStyle, TFBSTools(>= 1.31.2) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | GRaNIE, MethReg |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | JASPAR2022_0.99.7.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/JASPAR2022/ |
| Package Downloads Report | Download Stats |