TreeAndLeaf
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see TreeAndLeaf.
Displaying binary trees with focus on dendrogram leaves
Bioconductor version: 3.16
The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.
Author: Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro
Maintainer: Milena A. Cardoso <milenandreuzo at gmail.com>
citation("TreeAndLeaf")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TreeAndLeaf")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TreeAndLeaf")| TreeAndLeaf: an graph layout to dendrograms. | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0) |
| Imports | RedeR(>= 1.40.4), igraph, ape |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RedeR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TreeAndLeaf_1.10.0.tar.gz |
| Windows Binary | TreeAndLeaf_1.10.0.zip |
| macOS Binary (x86_64) | TreeAndLeaf_1.10.0.tgz |
| macOS Binary (arm64) | TreeAndLeaf_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/TreeAndLeaf |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TreeAndLeaf |
| Bioc Package Browser | https://code.bioconductor.org/browse/TreeAndLeaf/ |
| Package Short Url | https://bioconductor.org/packages/TreeAndLeaf/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |