mtbls2

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see mtbls2.

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Bioconductor version: 3.14

Indole-3-acetaldoxime (IAOx) represents an early intermediate of the biosynthesis of a variety of indolic secondary metabolites including the phytoanticipin indol-3-ylmethyl glucosinolate and the phytoalexin camalexin (3-thiazol-2'-yl-indole). Arabidopsis thaliana cyp79B2 cyp79B3 double knockout plants are completely impaired in the conversion of tryptophan to indole-3-acetaldoxime and do not accumulate IAOx-derived metabolites any longer. Consequently, comparative analysis of wild-type and cyp79B2 cyp79B3 plant lines has the potential to explore the complete range of IAOx-derived indolic secondary metabolites.

Author: Steffen Neumann <sneumann at ipb-halle.de>

Maintainer: Steffen Neumann <sneumann at ipb-halle.de>

Citation (from within R, enter citation("mtbls2")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mtbls2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

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Details

biocViews	ExperimentData, MassSpectrometryData, RepositoryData
Version	1.24.0
License	CC0
Depends	R (>= 2.10)
Imports
System Requirements
URL	http://www.ebi.ac.uk/metabolights/MTBLS2 https://github.com/sneumann/mtbls2

Suggests	xcms(>= 3.13.8), CAMERA, Risa(>= 1.0.0), knitr, Heatplus, pcaMethods, sp, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	Autotuner, IPO, yamss
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mtbls2_1.24.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/mtbls2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mtbls2
Package Short Url	https://bioconductor.org/packages/mtbls2/
Package Downloads Report	Download Stats