macrophage
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see macrophage.
Human macrophage immune response
Bioconductor version: 3.14
This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.
Author: Michael Love
Maintainer: Michael Love <michaelisaiahlove at gmail.com>
citation("macrophage")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("macrophage")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("macrophage")| Salmon quantifications for human macrophage immune response experiment | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, RNASeqData, SequencingData |
| Version | 1.10.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | fishpond, fluentGenomics, GeneTonic, quantiseqr |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | macrophage_1.10.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/macrophage |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/macrophage |
| Package Short Url | https://bioconductor.org/packages/macrophage/ |
| Package Downloads Report | Download Stats |