RTCGA.mutations
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see RTCGA.mutations.
Mutations datasets from The Cancer Genome Atlas Project
Bioconductor version: 3.14
Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.
Author: Marcin Kosinski <m.p.kosinski at gmail.com>
Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>
citation("RTCGA.mutations")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTCGA.mutations")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RTCGA.mutations")| Using RTCGA to download mutations data as included in RTCGA.mutations | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation Data, ExperimentData |
| Version | 20151101.24.0 |
| License | GPL-2 |
| Depends | R (>= 3.2.0), RTCGA |
| Imports | |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/RTCGA/RTCGA/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | RTCGA |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RTCGA.mutations_20151101.24.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RTCGA.mutations |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RTCGA.mutations |
| Package Short Url | https://bioconductor.org/packages/RTCGA.mutations/ |
| Package Downloads Report | Download Stats |