GSE103322
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see GSE103322.
GEO accession data GSE103322 as a SingleCellExperiment
Bioconductor version: 3.14
Single cell RNA-Seq data for 5902 cells from 18 patients with oral cavity head and neck squamous cell carcinoma available as GEO accession [GSE103322] (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE103322). GSE103322 data have been parsed into a SincleCellExperiment object available in ExperimentHub.
Author: Mariano Alvarez [aut, cre]
Maintainer: Mariano Alvarez <reef103 at gmail.com>
citation("GSE103322")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GSE103322")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GSE103322")| scRNASeq HNSC data using Bioconductor's ExperimentHub | HTML | R Script |
| Reference Manual |
Details
| biocViews | CancerData, DNASeqData, ExperimentData, ExperimentHub, ExpressionData, GEO, Genome, Homo_sapiens_Data, RNASeqData, SingleCellData |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | Biobase, GEOquery |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | ExperimentHub(>= 0.99.6), knitr, BiocStyle, rmarkdown, SummarizedExperiment, SingleCellExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GSE103322_1.0.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/GSE103322 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GSE103322 |
| Package Short Url | https://bioconductor.org/packages/GSE103322/ |
| Package Downloads Report | Download Stats |