derfinderHelper
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see derfinderHelper.
derfinder helper package
Bioconductor version: 3.14
Helper package for speeding up the derfinder package when using multiple cores. This package is particularly useful when using BiocParallel and it helps reduce the time spent loading the full derfinder package when running the F-statistics calculation in parallel.
Author: Leonardo Collado-Torres [aut, cre] 
, Andrew E. Jaffe [aut] , Jeffrey T. Leek [aut, ths]
Maintainer: Leonardo Collado-Torres <lcolladotor at gmail.com>
citation("derfinderHelper")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("derfinderHelper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("derfinderHelper")| Introduction to derfinderHelper | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2.2) |
| Imports | IRanges(>= 1.99.27), Matrix, methods, S4Vectors(>= 0.2.2) |
| System Requirements | |
| URL | https://github.com/leekgroup/derfinderHelper |
| Bug Reports | https://support.bioconductor.org/t/derfinderHelper |
See More
| Suggests | sessioninfo, knitr (>= 1.6), BiocStyle(>= 2.5.19), RefManageR, rmarkdown (>= 0.3.3), testthat, covr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | derfinder |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | derfinderHelper_1.28.0.tar.gz |
| Windows Binary | derfinderHelper_1.28.0.zip |
| macOS 10.13 (High Sierra) | derfinderHelper_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/derfinderHelper |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/derfinderHelper |
| Bioc Package Browser | https://code.bioconductor.org/browse/derfinderHelper/ |
| Package Short Url | https://bioconductor.org/packages/derfinderHelper/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |