canceR
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see canceR.
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
Bioconductor version: 3.14
The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.
Maintainer: Karim Mezhoud <kmezhoud at gmail.com>
citation("canceR")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("canceR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("canceR")| canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software |
| Version | 1.28.04 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL-2 |
| Depends | R (>= 4.1), tcltk, cgdsr |
| Imports | GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils, grDevices |
| System Requirements | Tktable, BWidget |
| URL | |
| Bug Reports | https://github.com/kmezhoud/canceR/issues |
See More
| Suggests | testthat (>= 3.1), knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | canceR_1.28.04.tar.gz |
| Windows Binary | canceR_1.28.04.zip |
| macOS 10.13 (High Sierra) | canceR_1.28.04.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/canceR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/canceR |
| Bioc Package Browser | https://code.bioconductor.org/browse/canceR/ |
| Package Short Url | https://bioconductor.org/packages/canceR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |