HubPub
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see HubPub.
Utilities to create and use Bioconductor Hubs
Bioconductor version: 3.14
HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.
Author: Kayla Interdonato [aut, cre], Martin Morgan [aut]
Maintainer: Kayla Interdonato <kayla.morrell at roswellpark.org>
citation("HubPub")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HubPub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HubPub")| Creating A Hub Package: ExperimentHub or AnnotationHub | HTML | R Script |
| HubPub: Help with publication of Hub packages | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Software, ThirdPartyClient |
| Version | 1.2.5 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | available, usethis, biocthis, dplyr, aws.s3, fs, BiocManager, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/Bioconductor/HubPub/issues |
See More
| Suggests | AnnotationHubData, ExperimentHubData, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | AnnotationHub, AnnotationHubData, ExperimentHub, ExperimentHubData |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HubPub_1.2.5.tar.gz |
| Windows Binary | HubPub_1.2.5.zip |
| macOS 10.13 (High Sierra) | HubPub_1.2.5.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HubPub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HubPub |
| Bioc Package Browser | https://code.bioconductor.org/browse/HubPub/ |
| Package Short Url | https://bioconductor.org/packages/HubPub/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |