CyTOFpower
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see CyTOFpower.
Power analysis for CyTOF experiments
Bioconductor version: 3.14
This package is a tool to predict the power of CyTOF experiments in the context of differential state analyses. The package provides a shiny app with two options to predict the power of an experiment: i. generation of in-sicilico CyTOF data, using users input ii. browsing in a grid of parameters for which the power was already precomputed.
Author: Anne-Maud Ferreira [cre, aut] 
, Catherine Blish [aut], Susan Holmes [aut]
Maintainer: Anne-Maud Ferreira <anne-maud.ferreira at stanford.edu>
citation("CyTOFpower")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CyTOFpower")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CyTOFpower")| Power analysis for CyTOF experiments | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, FlowCytometry, SingleCell, Software, StatisticalMethod |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
| License | LGPL-3 |
| Depends | R (>= 4.1) |
| Imports | CytoGLMM, diffcyt, DT, dplyr, ggplot2, magrittr, methods, rlang, stats, shiny, shinyFeedback, shinyjs, shinyMatrix, SummarizedExperiment, tibble, tidyr |
| System Requirements | |
| URL |
See More
| Suggests | testthat (>= 3.0.0), BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CyTOFpower_1.0.0.tar.gz |
| Windows Binary | CyTOFpower_1.0.0.zip |
| macOS 10.13 (High Sierra) | CyTOFpower_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CyTOFpower |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CyTOFpower |
| Bioc Package Browser | https://code.bioconductor.org/browse/CyTOFpower/ |
| Package Short Url | https://bioconductor.org/packages/CyTOFpower/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |