pasillaBamSubset
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see pasillaBamSubset.
Subset of BAM files from "Pasilla" experiment
Bioconductor version: 3.13
Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.
Author: Hervé Pagès
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("pasillaBamSubset")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pasillaBamSubset")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DNASeqData, ExperimentData, Genome, RNASeqData |
| Version | 0.30.0 |
| License | LGPL |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | pasilla |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | APAlyzer, GenomicAlignments, GenomicFeatures, GenomicRanges, gmoviz, IRanges, karyoploteR, plyranges, TransView |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pasillaBamSubset_0.30.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pasillaBamSubset |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pasillaBamSubset |
| Package Short Url | https://bioconductor.org/packages/pasillaBamSubset/ |
| Package Downloads Report | Download Stats |