SNPlocs.Hsapiens.dbSNP149.GRCh38
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP149.GRCh38.
SNP locations for Homo sapiens (dbSNP Build 149)
Bioconductor version: 3.13
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
Author: Hervé Pagès
Maintainer: H. Pagès <hpages at fredhutch.org>
citation("SNPlocs.Hsapiens.dbSNP149.GRCh38")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP149.GRCh38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Version | 0.99.20 |
| License | Artistic-2.0 |
| Depends | BSgenome(>= 1.43.4) |
| Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg38 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MafDb.1Kgenomes.phase1.GRCh38, MafDb.1Kgenomes.phase3.GRCh38, MafDb.ExAC.r1.0.GRCh38, MafDb.ExAC.r1.0.nonTCGA.GRCh38, MafDb.gnomAD.r2.1.GRCh38, MafDb.gnomAD.r3.0.GRCh38, MafDb.gnomADex.r2.1.GRCh38, MafDb.TOPMed.freeze5.hg38, MafH5.gnomAD.r3.0.GRCh38, MafH5.gnomAD.v3.1.1.GRCh38 |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.20.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Package Short Url | https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP149.GRCh38/ |
| Package Downloads Report | Download Stats |