BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor.
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151)
Bioconductor version: 3.13
Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Only common single nucleotide variants (SNVs) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele, the most frequent allele was chosen as the minor allele to be injected into the reference genome.
Author: Jean-Philippe Fortin
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
citation("BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, BSgenome, Genetics, Homo_sapiens |
| Version | 0.0.9999 |
| License | CC BY-NC-ND 4.0 |
| Depends | R (>= 3.5.0), BSgenome(>= 1.56.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor_0.0.9999.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor/ |
| Package Downloads Report | Download Stats |