Changes in version 1.0.0                        

New Features

  - EWCE v1.0 on Bioconductor replaces the defunct EWCE v1.3.0 available
    on Bioconductor v3.5.
  - EWCE has been rendered scalable to the analysis of large datasets
  - drop_uninformative_genes() has been expanded to allow the
    utilisation of differential expression approaches
  - EWCE can now handle SingleCellExperiment (SCE) objects or other
    Ranged SummarizedExperiment (SE) data types and as input as well as
    the original format, described as a single cell transcriptome (SCT)
    object.

Deprecated & Defunct

  - The following functions have been renamed to use underscore in
    compliance with Bioconductor nomenclature:
    check.ewce.genelist.inputs
    cell.list.dist
    bootstrap.enrichment.test
    bin.specificity.into.quantiles
    bin.columns.into.quantiles
    add.res.to.merging.list
    prepare.genesize.control.network
    prep.dendro
    get.celltype.table
    calculate.specificity.for.level
    calculate.meanexp.for.level
    generate.celltype.data
    generate.bootstrap.plots
    generate.bootstrap.plots.for.transcriptome
    fix.bad.mgi.symbols
    fix.bad.hgnc.symbols
    filter.genes.without.1to1.homolog
    ewce.plot
    cells.in.ctd
    drop.uninformative.genes