yaqcaffy
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see yaqcaffy.
Affymetrix expression data quality control and reproducibility analysis
Bioconductor version: 3.13
Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.
Author: Laurent Gatto
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
citation("yaqcaffy")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("yaqcaffy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | Artistic-2.0 |
| Depends | simpleaffy (>= 2.19.3), methods |
| Imports | stats4 |
| System Requirements | |
| URL |
See More
| Suggests | MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/yaqcaffy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/yaqcaffy |
| Package Short Url | https://bioconductor.org/packages/yaqcaffy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |