rnaseqcomp
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see rnaseqcomp.
Benchmarks for RNA-seq Quantification Pipelines
Bioconductor version: 3.13
Several quantitative and visualized benchmarks for RNA-seq quantification pipelines. Two-condition quantifications for genes, transcripts, junctions or exons by each pipeline with necessary meta information should be organized into numeric matrices in order to proceed the evaluation.
Author: Mingxiang Teng and Rafael A. Irizarry
Maintainer: Mingxiang Teng <tengmx at gmail.com>
citation("rnaseqcomp")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rnaseqcomp")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rnaseqcomp")| The rnaseqcomp user's guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | QualityControl, RNASeq, Software, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.2.0) |
| Imports | RColorBrewer, methods |
| System Requirements | |
| URL | https://github.com/tengmx/rnaseqcomp |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SummarizedBenchmark |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rnaseqcomp_1.22.0.tar.gz |
| Windows Binary | rnaseqcomp_1.22.0.zip |
| macOS 10.13 (High Sierra) | rnaseqcomp_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rnaseqcomp |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rnaseqcomp |
| Bioc Package Browser | https://code.bioconductor.org/browse/rnaseqcomp/ |
| Package Short Url | https://bioconductor.org/packages/rnaseqcomp/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |