powerTCR
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see powerTCR.
Model-Based Comparative Analysis of the TCR Repertoire
Bioconductor version: 3.13
This package provides a model for the clone size distribution of the TCR repertoire. Further, it permits comparative analysis of TCR repertoire libraries based on theoretical model fits.
Author: Hillary Koch
Maintainer: Hillary Koch <hillary.koch01 at gmail.com>
citation("powerTCR")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("powerTCR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("powerTCR")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, Clustering, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (6 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | cubature, doParallel, evmix, foreach, magrittr, methods, parallel, purrr, stats, truncdist, vegan, VGAM |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | scRepertoire |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | powerTCR_1.12.0.tar.gz |
| Windows Binary | powerTCR_1.12.0.zip |
| macOS 10.13 (High Sierra) | powerTCR_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/powerTCR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/powerTCR |
| Bioc Package Browser | https://code.bioconductor.org/browse/powerTCR/ |
| Package Short Url | https://bioconductor.org/packages/powerTCR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |