barcodetrackR
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see barcodetrackR.
Functions for Analyzing Cellular Barcoding Data
Bioconductor version: 3.13
barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data. Data required is samples and tag abundances in matrix form. Usually from cellular barcoding experiments, integration site retrieval analyses, or similar technologies.
Author: Diego Alexander Espinoza [aut, cre], Ryland Mortlock [aut]
Maintainer: Diego Alexander Espinoza <diego.espinoza at pennmedicine.upenn.edu>
citation("barcodetrackR")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("barcodetrackR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("barcodetrackR")| barcodetrackR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3 years) |
| License | file LICENSE |
| Depends | R (>= 4.1) |
| Imports | cowplot, circlize, dplyr, ggplot2, ggdendro, ggridges, graphics, grDevices, magrittr, plyr, proxy, RColorBrewer, rlang, scales, shiny, stats, SummarizedExperiment, S4Vectors, tibble, tidyr, vegan, viridis, utils |
| System Requirements | |
| URL | https://github.com/dunbarlabNIH/barcodetrackR |
See More
| Suggests | BiocStyle, knitr, magick, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | barcodetrackR_1.0.0.tar.gz |
| Windows Binary | barcodetrackR_1.0.0.zip |
| macOS 10.13 (High Sierra) | barcodetrackR_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/barcodetrackR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/barcodetrackR |
| Bioc Package Browser | https://code.bioconductor.org/browse/barcodetrackR/ |
| Package Short Url | https://bioconductor.org/packages/barcodetrackR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |