OTUbase
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see OTUbase.
Provides structure and functions for the analysis of OTU data
Bioconductor version: 3.13
Provides a platform for Operational Taxonomic Unit based analysis
Author: Daniel Beck, Matt Settles, and James A. Foster
Maintainer: Daniel Beck <danlbek at gmail.com>
Citation (from within R, enter
citation("OTUbase")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("OTUbase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OTUbase")| An introduction to OTUbase | R Script | |
| Reference Manual |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (13.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), methods, S4Vectors, IRanges, ShortRead(>= 1.23.15), Biobase, vegan |
| Imports | Biostrings |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | OTUbase_1.42.0.tar.gz |
| Windows Binary | OTUbase_1.42.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | OTUbase_1.42.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/OTUbase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/OTUbase |
| Bioc Package Browser | https://code.bioconductor.org/browse/OTUbase/ |
| Package Short Url | https://bioconductor.org/packages/OTUbase/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |