MEAT
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see MEAT.
Muscle Epigenetic Age Test
Bioconductor version: 3.13
This package estimates epigenetic age in skeletal muscle, using DNA methylation data generated with the Illumina Infinium technology (HM27, HM450 and HMEPIC).
Author: Sarah Voisin [aut, cre] 
, Steve Horvath [ctb]
Maintainer: Sarah Voisin <sarah.voisin.aeris at gmail.com>
citation("MEAT")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MEAT")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MEAT")| MEAT | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | BiomedicalInformatics, DNAMethylation, Epigenetics, MethylationArray, Microarray, Normalization, Preprocessing, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0) |
| Imports | impute(>= 1.58), dynamicTreeCut (>= 1.63), glmnet (>= 2.0), grDevices, graphics, stats, utils, stringr, tibble, RPMM (>= 1.25), minfi(>= 1.30), dplyr, SummarizedExperiment, wateRmelon |
| System Requirements | |
| URL | https://github.com/sarah-voisin/MEAT |
| Bug Reports | https://github.com/sarah-voisin/MEAT/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MEAT_1.4.0.tar.gz |
| Windows Binary | MEAT_1.4.0.zip |
| macOS 10.13 (High Sierra) | MEAT_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MEAT |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MEAT |
| Bioc Package Browser | https://code.bioconductor.org/browse/MEAT/ |
| Package Short Url | https://bioconductor.org/packages/MEAT/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |