HCABrowser

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HCABrowser.

Browse the Human Cell Atlas data portal


Bioconductor version: 3.13

Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.

Author: Daniel Van Twisk <Daniel.VanTwisk at RoswellPark.org>, Martin Morgan <Martin.Morgan at RoswellPark.org>, Bioconductor Package Maintainer <maintainer at bioconductor.org>

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("HCABrowser")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCABrowser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, Sequencing, SingleCell, Software
Version 1.8.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6.0), dplyr, AnVIL
Imports utils, methods, tibble, BiocFileCache, googleAuthR, httr, jsonlite, readr, rlang
System Requirements
URL https://github.com/Bioconductor/HCABrowser
Bug Reports https://github.com/Bioconductor/HCABrowser/issues
See More
Suggests BiocStyle, knitr, rmarkdown, stringr, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me HCAMatrixBrowser
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/HCABrowser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HCABrowser
Package Short Url https://bioconductor.org/packages/HCABrowser/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.13 Source Archive