curatedBreastData
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see curatedBreastData.
Curated breast cancer gene expression data with survival and treatment information
Bioconductor version: 3.11
Curated human breast cancer tissue S4 ExpresionSet datasets from over 16 clinical trials comprising over 2,000 patients. All datasets contain at least one type of outcomes variable and treatment information (minimum level: whether they had chemotherapy and whether they had hormonal therapy). Includes code to post-process these datasets.
Author: Katie Planey
Maintainer: Katie Planey <katie.planey at gmail.com>
citation("curatedBreastData")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("curatedBreastData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("curatedBreastData")| Manual | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BreastCancerData, CancerData, ExperimentData, ExpressionData, GEO, MicroarrayData, Tissue, TissueMicroarrayData, qPCRData |
| Version | 2.16.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.0.0), XML, ggplot2, impute, Biobase, BiocStyle |
| Imports | methods, stats |
| System Requirements | |
| URL |
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | curatedBreastData_2.16.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/curatedBreastData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/curatedBreastData |
| Package Short Url | https://bioconductor.org/packages/curatedBreastData/ |
| Package Downloads Report | Download Stats |