cgdv17

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cgdv17.

Complete Genomics Diversity Panel, chr17 on 46 individuals


Bioconductor version: 3.11

Complete Genomics Diversity Panel, chr17 on 46 individuals

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("cgdv17")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cgdv17")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cgdv17")
cgdv17: extract from Complete Genomics diversity panel PDF R Script
Reference Manual PDF

Details

biocViews BiocViews, ExperimentData, SNPData, SequencingData
Version 0.26.0
License Artistic-2.0
Depends R (>= 2.15), methods, VariantAnnotation(>= 1.15.15)
Imports BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biobase
System Requirements
URL
See More
Suggests parallel, GGtools, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, illuminaHumanv1.db
Linking To
Enhances
Depends On Me variants
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cgdv17_0.26.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/cgdv17
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cgdv17
Package Short Url https://bioconductor.org/packages/cgdv17/
Package Downloads Report Download Stats