RIPSeekerData
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RIPSeekerData.
test data for RIPSeeker
Bioconductor version: 3.11
The RIP-seq data in BAM format are the test data for the package RIPSeeker. The data correspond to two RIP-seq experiments, namely PRC2 and CCNT1. Raw data from NCBI Gene Expression Omnibus under accession numbers GSE17064 for PRC2 and in-house for CCNT1.
Author: Yue Li
Maintainer: Alejandro Reyes <reyes at embl.de>
citation("RIPSeekerData")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RIPSeekerData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RIPSeekerData")| RIP-seq datasets for testing RIPSeeker package | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, GEO, Genome, RIPSeqData, SequencingData, StemCell |
| Version | 1.24.0 |
| License | GPL-2 |
| Depends | RIPSeeker |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RIPSeekerData_1.24.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RIPSeekerData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RIPSeekerData |
| Package Short Url | https://bioconductor.org/packages/RIPSeekerData/ |
| Package Downloads Report | Download Stats |