FlowSorted.CordBloodCombined.450k

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see FlowSorted.CordBloodCombined.450k.

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells


Bioconductor version: 3.11

Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.

Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]

Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>

Citation (from within R, enter citation("FlowSorted.CordBloodCombined.450k")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FlowSorted.CordBloodCombined.450k")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FlowSorted.CordBloodCombined.450k")
FlowSorted.CordBloodCombined.450k HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData
Version 1.4.1
License GPL-3
Depends R (>= 3.6), minfi(>= 1.21.2), SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, ExperimentHub(>= 1.9.1), FlowSorted.Blood.EPIC, utils
Imports
System Requirements
URL https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k
Bug Reports https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues.
See More
Suggests knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me FlowSorted.Blood.EPIC
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FlowSorted.CordBloodCombined.450k_1.4.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/FlowSorted.CordBloodCombined.450k
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FlowSorted.CordBloodCombined.450k
Package Short Url https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/
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