MafH5.gnomAD.r3.0.GRCh38

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see MafH5.gnomAD.r3.0.GRCh38.

Minor allele frequency data from gnomAD release 3.0 for GRCh38 stored using a HDF5 backend


Bioconductor version: 3.11

Store minor allele frequency data from the Genome Aggregation Database (gnomAD release 3.0) for the human genome version GRCh38 using a HDF5 backend.

Author: Robert Castelo

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("MafH5.gnomAD.r3.0.GRCh38")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MafH5.gnomAD.r3.0.GRCh38")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.11.0
License Artistic-2.0
Depends R (>= 3.5.0), GenomicScores(>= 1.11.7)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome, rhdf5, HDF5Array
System Requirements
URL
See More
Suggests SNPlocs.Hsapiens.dbSNP149.GRCh38
Linking To
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MafH5.gnomAD.r3.0.GRCh38_3.11.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Package Short Url https://bioconductor.org/packages/MafH5.gnomAD.r3.0.GRCh38/
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