---
title: "A walkthrough the easyRNASeq package functionalities"
author: "Nicolas Delhomme"
date: "`r Sys.Date()`"
bibliography: Bibliography/References.bib
output: 
  html_document:
    fig_captions: yes
    number_seections: yes
    pandoc_args:
    - +RTS
    - -K500m
    - -RTS
    toc: yes
vignette: >
  %\VignetteIndexEntry{geneNetworkR}
  %\VignetteEngine{knitr::rmarkdown}
  \usepackage[utf8]{inputenc}
---

```{r style, echo=FALSE, results='asis'}
BiocStyle::markdown()
```

```{r message=FALSE,warning=FALSE,results='hide',echo=FALSE}
options(digits=2)
```

```{r child = "Chapters/01-Introduction.Rmd"}
```

```{r child = "Chapters/02-AnnotParam.Rmd"}
```

```{r child = "Chapters/03-SyntheticTranscripts.Rmd"}
```

```{r child = "Chapters/04-BamParam.Rmd"}
```

```{r child = "Chapters/05-RnaSeqParam.Rmd"}
```

```{r child = "Chapters/06-simpleRNASeq.Rmd"}
```

```{r child = "Chapters/07-cleanUp.Rmd"}
```

```{r child = "Chapters/08-Session-Info.Rmd"}
```

```{r child = "Chapters/09-Acknowledgments.Rmd"}
```

```{r child = "Chapters/10-Foonotes.Rmd"}
```

```{r child = "Chapters/11-Images.Rmd"}
```

```{r child = "Chapters/12-Appendix.Rmd"}
```

# References