Changes in version 1.2.4 (2020-08-14)                  

  - Supported defining gene set database from score matrix by setting
    higher, lower, as well as padj cutoffs for gCMAP and Fisher GESS
    methods

                 Changes in version 1.2.2 (2020-07-11)                  

  - Supported converting gmt file to HDF5 file (01 matrix) as gene set
    reference database for gCMAP and Fisher GESS methods

                 Changes in version 1.0.6 (2020-04-19)                  

  - Supported searching refdb parallelly by using multiple cores on a
    single machine

                 Changes in version 1.0.5 (2020-04-10)                  

  - Fix bug: fixed null issue and throw warning messages when up or down
    gene sets share zero identifiers with refdb for gess_lincs method.

                 Changes in version 1.0.4 (2020-04-02)                  

  - Added instructions for GESS batch queries in vignette
  - Added runWF function to run entire GESS/FEA workflow

                 Changes in version 1.0.3 (2020-02-07)                  

  - Supported converting feaResult object to enrichResult object in the
    clusterProfiler package so that the plotting functionalities in the
    latter package such as dotplots and gene-concept networks could be
    applied to the FEA enrichment results
  - Supported searching against subset of refdb (subsetted specific
    columns (treatments) in the refdb (e.g. lincs)) for GESS methods
  - Updated comp_fea_res function to reduce number of characters in
    description
  - Added functions to draw different types of query GESs from refdb
  - Added deprof2subexpr function to get a subset of gene expression
    values from a differential expression profile

                 Changes in version 1.0.2 (2020-01-21)                  

  - Fix bug: the enrichment results from DSEA methods and some of TSEA
    methods were added an aditional 'ont' column where the GO itmes were
    subsetted to the selected ontology

                 Changes in version 1.0.1 (2019-11-10)                  

  - Support windows by not depending gCMAP package
  - Deal with HDF5 files with functions in HDF5Array package

                 Changes in version 1.0.0 (2019-10-23)                  

  - Initial version

                Changes in version 0.99.20 (2019-10-22)                 

  - Submitted to Bioconductor
  - Major changes
      - used HDF5 file to read and write the matrix in batches
      - data stored in ExperimentHub