Changes in version 1.0.5                        

  - update vignette for the R version requirement.

                        Changes in version 1.0.4                        

  - update authorship

                        Changes in version 1.0.3                        

  - Fix the error "CIGAR is empty after qnarrowing".

                        Changes in version 1.0.2                        

  - update vignette to fix the typos.

                        Changes in version 1.0.1                        

  - update vignette by adding background colors for better understanding
    the pipeline.

                       Changes in version 0.99.91                       

  - change Y-axis lable from Frequence to Frequency for plot
    Distance2Codon.
  - update vignette.

                       Changes in version 0.99.9                        

  - reset the test_estimatePsite.

                       Changes in version 0.99.8                        

  - decrease the testing time.

                       Changes in version 0.99.6                        

  - fix the warning missing link of plot in plotTE.

                       Changes in version 0.99.5                        

  - update ggBar function to accept more colors.
  - update readsEndPlot function with shift parameter.
  - update plotDistance2Codon function with a range of plot window
  - add codonUsage function.

                       Changes in version 0.99.4                        

  - update the description in DESCRIPTION.
  - update help files.

                       Changes in version 0.99.3                        

  - change the link from AtomicList to AtomicList-class and RUVs-methods
    to RUVs.
  - shorter lines < 80 characters.
  - spead up coverageDepth

                       Changes in version 0.99.2                        

  - remove .DS_Store

                       Changes in version 0.99.1                        

  - decrease the size of the package
  - simplify and add parameter anchor for the estimatePsite function.
  - add parameter normByLibSize for function translationalEfficiency
  - add more test files.
  - update documentations.

                       Changes in version 0.99.0                        

  - Submit to Bioconductor.

                        Changes in version 0.0.6                        

  - Remove sapply.

                        Changes in version 0.0.1                        

  - Create the package.