Changes in version 0.1.0 (2020-01-16): + Initial commit + Creation of the SingleCellMapper package + Created inst/extdata folder with example images and data + Build the ImageList class + Created first unit tests for ImageList constructor + test Changes in version 0.1.1 (2020-02-02): + Simplified structure of loadImages function + Created validity checks for path and file inputs + Fixed bugs to pass R CMD check + test Changes in version 0.1.2 (2020-02-03): + channelNames generic function for Image and ImageList object + Reduced the size of example data + Wrote docs on data Changes in version 0.1.3 (2020-02-16): + Full docs and tests on: - ImageList-naming - ImageList-subsetting Changes in version 0.1.4 (2020-02-16): + Full docs and test on: - loadImages - ImageList-class Changes in version 0.1.5 (2020-03-03): + plotCells function + plotPixels function + Options for further customization of scale_bar + Options for image_title customization + Started vignette draft Changes in version 0.1.6 (2020-03-10): + Unit tests on plotCells and plotPixels + Improved setting colours + Rewrite to reduce validity checks Changes in version 0.1.7 (2020-03-17): + Added scaleImages and normalize functions + Expanded shared parameters for plotPixels and plotCells Changes in version 0.1.8 (2020-03-18): + Option to remove legend + Cleaned up representation of legend on plot Changes in version 0.1.9 (2020-03-20): + scale, return_plot, return_images, legend, margin, display parameters + Finalised unit tests Changes in version 0.1.10 (2020-03-21): + interpolate parameter + Bug fix to achieve correct aspect ratios Changes in version 0.1.11 (2020-03-24): + Complete documentation of all package functions Changes in version 0.1.12 (2020-03-25): + Renamed package from SingleCellMapper to cytomapper + Renamed ImageList class to CytoImageList class Changes in version 0.1.13 (2020-03-28): + Full vignette and correction to docs Changes in version 0.99.0 (2020-03-30): + Formatted the package for Bioconductor submission Changes in version 0.99.4 (2020-04-01): + Fixed docs to pass checks on Windows Changes in version 0.99.4 (2020-04-01): + Aesthetic changes to scale bar, image title and legend title + Removed channelNames as Image generic + removed exported plot method Changes in version 0.99.5 (2020-04-10): + Added script to generate the toy dataset + Modified the toy dataset + Added more explanation on datasets to vignette + Bug fixes when colouring cells + Unit tests on all hidden functions + Account for over-saturation when merging colours Changes in version 0.99.5 (2020-04-17): + Fixed labelling of colour legends + Corrected typos in docs and vignette + Avoid recalculation of min/max values in legend function