synergyfinder

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see synergyfinder.

Calculate and Visualize Synergy Scores for Drug Combinations


Bioconductor version: 3.11

Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.

Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>, Shuyu Zheng <shuyu.zheng at helsinki.fi>

Maintainer: Shuyu Zheng <shuyu.zheng at helsinki.fi>

Citation (from within R, enter citation("synergyfinder")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("synergyfinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("synergyfinder")
synergyfinder PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software, StatisticalMethod
Version 2.2.4
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Mozilla Public License 2.0
Depends R (>= 3.6.0), methods
Imports drc (>= 2.5-12), reshape2 (>= 1.4.1), ggplot2 (>= 2.1.0), grid (>= 3.2.4), lattice (>= 0.20-33), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package synergyfinder_2.2.4.tar.gz
Windows Binary synergyfinder_2.2.4.zip (32- & 64-bit)
macOS 10.13 (High Sierra) synergyfinder_2.2.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/synergyfinder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/synergyfinder
Bioc Package Browser https://code.bioconductor.org/browse/synergyfinder/
Package Short Url https://bioconductor.org/packages/synergyfinder/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive