sojourner

This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sojourner.

Statistical analysis of single molecule trajectories

Bioconductor version: 3.11

Single molecule tracking has evolved as a novel new approach complementing genomic sequencing, it reports live biophysical properties of molecules being investigated besides properties relating their coding sequence; here we provided "sojourner" package, to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data.

Author: Sheng Liu [aut], Sun Jay Yoo [aut], Xiao Na Tang [aut], Young Soo Sung [aut], Carl Wu [aut], Anand Ranjan [ctb], Vu Nguyen [ctb], Sojourner Developer [cre]

Maintainer: Sojourner Developer <sojourner.developer at outlook.com>

Citation (from within R, enter citation("sojourner")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sojourner")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sojourner")

Sojourner: an R package for statistical analysis of single molecule trajectories	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software, Technology, WorkflowStep
Version	1.2.1
In Bioconductor since	BioC 3.10 (R-3.6) (4.5 years)
License	Artistic-2.0
Depends
Imports	ggplot2, dplyr, reshape2, gridExtra, EBImage, MASS, R.matlab, Rcpp, fitdistrplus, mclust, minpack.lm, mixtools, mltools, nls2, plyr, rtiff, sampSurf, scales, shiny, shinyjs, sp, truncnorm, utils, stats, pixmap, rlang, graphics, grDevices, grid, compiler, lattice
System Requirements
URL	https://github.com/sheng-liu/sojourner
Bug Reports	https://github.com/sheng-liu/sojourner/issues

Suggests	BiocStyle, knitr, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sojourner_1.2.1.tar.gz
Windows Binary	sojourner_1.1.1.zip
macOS 10.13 (High Sierra)	sojourner_1.2.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sojourner
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sojourner
Bioc Package Browser	https://code.bioconductor.org/browse/sojourner/
Package Short Url	https://bioconductor.org/packages/sojourner/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive