scMAGeCK
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see scMAGeCK.
Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
Bioconductor version: 3.11
scMAGeCK is a computational model to identify genes associated with multiple expression phenotypes from CRISPR screening coupled with single-cell RNA sequencing data (CROP-seq)
Author: Wei Li, Xiaolong Cheng
Maintainer: Xiaolong Cheng <xiaolongcheng1120 at gmail.com>
citation("scMAGeCK")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scMAGeCK")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scMAGeCK")| scMAGeCK | HTML | R Script |
| Reference Manual |
Details
| biocViews | CRISPR, GeneExpression, PooledScreens, RNASeq, Regression, SingleCell, Software, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
| License | BSD_2_clause |
| Depends | |
| Imports | Seurat, stats, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scMAGeCK_1.0.0.tar.gz |
| Windows Binary | scMAGeCK_1.0.0.zip |
| macOS 10.13 (High Sierra) | scMAGeCK_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scMAGeCK |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scMAGeCK |
| Bioc Package Browser | https://code.bioconductor.org/browse/scMAGeCK/ |
| Package Short Url | https://bioconductor.org/packages/scMAGeCK/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |