scDblFinder

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see scDblFinder.

scDblFinder


Bioconductor version: 3.11

Efficient identification of doublets in single-cell RNAseq directly from counts using overclustering-based generation of artifical doublets.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("scDblFinder")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scDblFinder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scDblFinder")
scDblFinder HTML R Script
Reference Manual PDF

Details

biocViews Preprocessing, RNASeq, SingleCell, Software
Version 1.2.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 4.0)
Imports igraph, Matrix, matrixStats, BiocParallel, BiocNeighbors, BiocSingular, SummarizedExperiment, SingleCellExperiment, scran, scater, data.table, dplyr, ggplot2, randomForest, graphics, methods, stats, DelayedArray
System Requirements
URL https://github.com/plger/scDblFinder
Bug Reports https://github.com/plger/scDblFinder/issues
See More
Suggests BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scDblFinder_1.2.0.tar.gz
Windows Binary scDblFinder_1.2.0.zip
macOS 10.13 (High Sierra) scDblFinder_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scDblFinder
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scDblFinder
Bioc Package Browser https://code.bioconductor.org/browse/scDblFinder/
Package Short Url https://bioconductor.org/packages/scDblFinder/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive