rDGIdb
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see rDGIdb.
R Wrapper for DGIdb
Bioconductor version: 3.11
The rDGIdb package provides a wrapper for the Drug Gene Interaction Database (DGIdb). For simplicity, the wrapper query function and output resembles the user interface and results format provided on the DGIdb website (http://www.dgidb.org/).
Author: Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, and Niko Beerenwinkel
Maintainer: Thomas Thurnherr <thomas.thurnherr at gmail.com>
citation("rDGIdb")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rDGIdb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rDGIdb")
Query DGIdb using R | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Annotation, FunctionalGenomics, Pharmacogenetics, Pharmacogenomics, ResearchField, Software, WorkflowStep |
Version | 1.14.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
License | MIT + file LICENSE |
Depends | |
Imports | jsonlite, httr, methods, graphics |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | rDGIdb_1.14.0.tar.gz |
Windows Binary | rDGIdb_1.14.0.zip |
macOS 10.13 (High Sierra) | rDGIdb_1.14.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/rDGIdb |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rDGIdb |
Bioc Package Browser | https://code.bioconductor.org/browse/rDGIdb/ |
Package Short Url | https://bioconductor.org/packages/rDGIdb/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |