pcot2
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pcot2.
Principal Coordinates and Hotelling's T-Square method
Bioconductor version: 3.11
PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.
Author: Sarah Song, Mik Black
Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>
citation("pcot2")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pcot2")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pcot2")| PCOT2 Vignette | R Script | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GeneExpression, KEGG, Microarray, Network, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.0.0), grDevices, Biobase, amap |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | multtest, hu6800.db, KEGG.db, mvtnorm |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pcot2_1.56.0.tar.gz |
| Windows Binary | pcot2_1.56.0.zip |
| macOS 10.13 (High Sierra) | pcot2_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pcot2 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pcot2 |
| Bioc Package Browser | https://code.bioconductor.org/browse/pcot2/ |
| Package Short Url | https://bioconductor.org/packages/pcot2/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |